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Mouse Pathology On-Line |
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Courtesy of Dr Laurence Fiette and the EUROGEMS mouse pathology course |
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Mouse genetics |
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Jackson Lab |
Almost everything about |
http://www.jax.org/resources/index.html |
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MGI, Mouse Genome Informatics |
genetics. mutants etc |
http://www.informatics.jax.org/ |
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MGI, mouse nomenclature home page |
Genes, alleles, mutations strains |
http://www.informatics.jax.org/mgihome/nomen/index.shtml |
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IMSR-International Mouse Strain Resource |
Genetic glossary |
http://www.informatics.jax.org/imsr/glossary.jsp |
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Lee Silver's Mouse genetics |
Web version of the from L. Silver, 1995 |
http://www.informatics.jax.org/silver/ |
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Transgenic Animal Web |
Breeding suggestions |
http://www.med.umich.edu/tamc/breed.html |
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Phenotyping |
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SHIRPA protocols |
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http://www.springerlink.com/media/4G117BNPNE4RYVCF4ECN/Contributions/E/5/P/8/E5P8BL1BRDBTPR58.pdf |
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| Necropsy, trimming |
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| EULEP, EUropean
Late Effects Project |
Covelli's Necropsy protocol & pictures |
http://eulep.pdn.cam.ac.uk/Necropsy_of_the_Mouse/index_2004.php |
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| Virtual Mouse Necropsy, NIAID, |
with drawings |
http://www.niaid.nih.gov/dir/services/animalcare/Mousenecropsy/necropsy.html |
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| Eumorphia |
EC Integrated research programme |
http://www.eumorphia.org/EMPReSS/servlet/EMPReSS.frameset |
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| RENI, Registry
Nomenclature Information System |
Trimming guidelines |
http://www.item.fraunhofer.de/reni/trimming/TR_F.htm |
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| Organ sampling & trimming |
Joint publication |
http://www.elsevier-deutschland.de/etp# |
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| RITA & NACAD Groups |
Part 1, Part 2, Part 3 |
Exp Tox Pathol 2003, 55, 91 / 2004 55, 413 / 2004, 55, 433 |
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| Histological techniques |
Immunoportal |
IHC, ISH protocols, downloads, links |
http://www.immunoportal.com |
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| Protocols on line |
Useful links research protocols |
http://www.protocol-online.org/ |
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| University of Utah |
Histology procedures |
http://www-medlib.med.utah.edu/WebPath/HISTHTML/MANUALS/MANUALS.html |
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| University of Columbia-Medical
School |
Various links to protocols |
http://icg.cpmc.columbia.edu/cattoretti/Protocol/Links.html |
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| University of Bristol |
Histological techniques, simple |
http://www.bris.ac.uk/Depts/PathAndMicro/CPL/histmeth.htm |
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| DAKO Handbook |
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http://www.dakocytomation.us/index/us_support_literature_index/ |
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| us_support_literature_immhandbook.htm |
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| University of Columbia-Medical
School |
List of Ab for mouse tissues |
http://Antibodies_for_mouse_IHC.html |
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| PHL murine IHC database |
Searchable DTB, technical information |
http://web.ncifcrf.gov/rtp/lasp/phl/immuno/
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| NIEHS-Laboratory
of Experimental Pathology |
Technical information, images |
http://dir.niehs.nih.gov/dirlep/immuno/
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| MTB-Jackson Lab |
Searchable database |
http://tumor.informatics.jax.org/FMPro?-db=Image&-format=pathology_search.html&-view |
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| technical information, images |
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Phenotyping
(following) |
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| Academic
phenotyping labs |
German Mouse Clinic |
GSF, Munich |
http://www0.gsf.de/ieg/gmc/index.html
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| Institut Clinique de la
Souris |
Strasbourg, France |
http://www-mci.u-strasbg.fr/ao.html
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| Mutant Mouse Pathology
Laboratory |
University of California, Davis, USA |
http://tgmouse.compmed.ucdavis.edu/HistoLab/ |
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| University of Cornell |
GEM Phenotyping Core Facilitty |
http://www.med.cornell.edu/research/cores/gem/ |
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| NCI Pathology &
Histotechnology Laboratory |
Frederick, USA |
http://web.ncifcrf.gov/rtp/lasp/phl/ |
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| Yale
University, |
USA |
http://info.med.yale.edu/yarc/mousephenotype.htm |
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| Ohio State University |
USA |
http://www.mousepheno.osu.edu/ |
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| ULAM, Unit
for laboratory Animal Medicine |
University of Michigan, USA |
http://www.ulam.umich.edu/services/pathcons.htm |
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| RADIL, Research
Animal Diagnostic Laboratory |
University of Missouri, USA |
http://www.radil.missouri.edu/info/diagtesting/services/pathology.asp |
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| Rodent Phenotyping Center |
John Hopkins Medicine, Maryland |
http://www.hopkinsmedicine.org/comparativemedicine/phenocenter/ |
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| Private |
Frimorfo |
Fribourg, Switzerland |
http://www.frimorfo.com |
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| Charles River Laboratories |
USA, Europe |
http://www.criver.com/SRM/tgs/index.html |
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| Taconic |
USA |
http://www.taconic.com/ |
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Searching for my
mouse |
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| Searchable DTB |
MGI-Mouse Genome Informatics-Jackson |
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http://www.informatics.jax.org/ |
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| CGMCC- Center Genome Mouse |
Friedberg |
http://niehs.nih.gov/cgmcc/friedsch.htm |
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| Phenome database-Jackson |
Phenotypic & genotypic data |
http://aretha.jax.org/pub-cgi/phenome/mpdcgi?rtn=docs/home |
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| ILAR-Institute
for Laboratory Animal research |
National Academy Science, models list |
http://dels.nas.edu/ilar/ext_search.asp |
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| Mouse Tumor Biology Database |
Tumor search, strain search |
http://tumor.informatics.jax.org/FMPro?-db=TumorInstance&-format=tumor_search.html&-view |
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| Frontiers in Bioscience |
Various topics including KO DTB |
http://bioscience.org/ |
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| Academic resources & repositories |
IFMR-International Federation of Mouse
Resources |
Consortium USA-Canada-Europe-Japon |
http://www.informatics.jax.org/imsr/ifmr.html |
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| IMSR-International
Mouse Strain Resource |
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http://www.informatics.jax.org/imsr/index.jsp |
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| IMR-Induced
Mutant Resource-Jackson |
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http://www.jax.org/imr/notes.html |
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| MMHCC-Mouse Models of Human Cancers Consortium- NCI |
http://mouse.ncifcrf.gov/ |
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| MMRRC-Mouse Mutant Regional Resource Center Consortium |
http://www.MMRRC.org |
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| ORNL-Oak
Ridge National Laboratory |
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http://www.bio.ornl.gov/mouse/ |
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| RIKEN Institute Bioresource Center |
Large scale mutagenesis programme |
http://www.gsc.riken.go.jp/Mouse/ |
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| EMMA-European
Mouse Mutant Archive |
European Consortium |
http://www.emma.rm.cnr.it |
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| MGU- Mouse
Genetics Unit |
MRC Harwell Mutagenesis Programme |
http://www.mgu.har.mrc.ac.uk/facilities/stocklist/search.html |
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| CMHD-Centre
For Modelling Human Diseases |
Different research areas, Toronto |
http://www.cmhd.ca/ |
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| JMSR-Japan
Mouse Strain Resource |
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http://shigen.lab.nig.ac.jp/mouse/jmsr/strains.jsp |
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| CARD
R-BASE- Center for Animal Resource & Development,
Japan |
http://cardb.cc.kumamoto-u.ac.jp/transgenic/about.jsp |
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| MMCDD-Mouse Mutagenesis
Center for Developmental Defects |
http://www.mouse-genome.bcm.tmc.edu/ENU/ENUMutantSources.asp |
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Baylor College of Medecine |
Genetically-Engineered%20Mice.html |
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| TMGC-Tennessee
Mouse Genome Consortium |
88 mutants defined |
http://tnmouse.org/ |
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| Neuromice |
Development, distribution neuro models |
http://www.neuromice.org |
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Searching for my
mouse (following) |
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| Private |
Charles River Laboratories |
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http://www.criver.com |
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| Taconic |
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http://www.taconic.com/healthtesting/test_panels.htm |
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| Harlan |
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http://www.harlan.com/ |
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| Lexicon |
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http://www.lexicon-genetics.com/index.php |
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| Xenogen |
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http://www.xenogen.com |
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Pathology of GEMS |
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| Images |
Pathbase |
DTB histopatho mutants & GEMS |
http://eulep.pdn.cam.ac.uk/ |
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| MMHCC |
Normal histo, &
neoplasms |
http://imagearchive.compmed.ucdavis.edu/ |
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| The Visible Mouse |
Histo, patho prostate, mammary, ovary |
http://ccm.ucdavis.edu/tvmouse/
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| Mouse Tumor Biology Database
(MTB) |
Jackson's DTB on tumors |
http://tumor.informatics.jax.org/FMPro?-db=TumorInstance&-format=about_mtb.html&-findany |
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| Lesions of genetically
engineered mice |
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http://dir.niehs.nih.gov/dirlep/genmice2/open_me.htm
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Pathology & Biology of Genetically-Engineered Mice |
NIAID,-NIH, major links |
http://niaid.nih.gov/dir/services/animalcare/VetPathology/Genetically-Engineered%20Mice.html |
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RENI pathology mouse |
Classification of tumors, glossary |
http://www.ita.fhg.de/reni/index.htm
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Infectious diseases |
Tutorial from Steve Barthold |
http://www.afip.org/vetpath/POLA/micerat.txt |
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Comparative
Pathology |
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MMHCC models |
Reviews comparative patho |
http://emice.nci.nih.gov/ |
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DHMD, Dysmorphic Human-Mouse
Homology Database |
http://www.hgmp.mrc.ac.uk/DHMHD/dysmorph.html |
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| Recommendations |
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Pubmed reference |
http://www.ncbi.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=
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| Lymphoid organs |
Bethesda classification |
PubMed&list_uids=12070034&dopt=Abstract |
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| Non lymphoid hematopoietic |
Bethesda classification |
PubMed&list_uids=12070033&dopt=Abstract |
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| Mammary tumors |
Anannapolis meeting |
PubMed&list_uids=10713680&dopt=Abstract |
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| Neuropathology |
Neuropatho of GEMS |
PubMed&list_uids=12386807&dopt=Abstract |
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| Mouse models of intestinal
cancer |
Consensus report & recommendations |
PubMed&list_uids=12612914&dopt=Abstract |
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Sites dedicated to
specific organs |
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| Mammary gland |
UC Davis Mouse
Mammary Gland Site |
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http://tgmouse.compmed.ucdavis.edu/ |
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Slides from GEMS mammary tumors |
http://pathology.ucdavis.edu/tgmice/jaxworkshop/syllabus/frameset1.html
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| MMPL |
Mouse |
http://mammary.nih.gov/tools/index.html |
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| Mammary gland development
database |
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http://ana.ed.ac.uk/anatomy/database/mammbase/mammhome.html |
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Sites dedicated to
specific organs (following) |
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| Neurology |
Neuroanatomy Lab resource Appendice |
Numerous links about nervous system |
http://isc.temple.edu/neuroanatomy/lab/embryo_new |
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| High resolution mouse brain
atlas |
Wonderful atlas |
http://www.hms.harvard.edu/research/brain/atlas.html# |
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| MBL-Mouse Brain Library |
Very interesting too, atlas |
http://mbl.org/
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| Neuropath |
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http://www.neuropat.dote.hu/patholog.htm |
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| Neuropheno tenessee |
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http://neurophenotyping.utmem.edu/index2%20.html |
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| Miscellaneous |
Glandular organs development
database |
Links to kidney, saliv. gland, lung sites |
http://www.ana.ed.ac.uk/anatomy/database/orghome.html |
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| Kidney development database |
Large information, ref not updated |
http://golgi.ana.ed.ac.uk/kidhome.html
kidney |
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| Tooth |
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http://bite-it.helsinki.fi/ |
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| Immune systems mutants |
Harvard |
http://immunology.tch.harvard.edu/ |
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| Lymphoma leukemia |
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http://tgmouse.compmed.ucdavis.edu/lymleuk2/mouse.htm |
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| CVCGD-Cardiovascular comparative genomics database |
http://pga.lbl.gov/cvcgd.html |
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| Skin |
Nice pictures, skin mutants |
http://eulep.pdn.cam.ac.uk/~skinbase/index.php |
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| Leiden muscular dystrophies |
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http://www.dmd.nl |
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Histology &
Pathology on the Web |
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| Histology |
NIH histology atlas |
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http://histology.nih.gov/ |
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| Deltagen histology atlas |
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http://www.deltagen.com/target/histologyatlas/HistologyAtlas.html
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| Texas histology |
CD ROM for sale |
http://home.austin.rr.com/texashistopages/ |
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| University Illinois Atlas of
Histology |
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http://www.med.uiuc.edu/histo/small/atlas/index.htm |
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| University Iowa Virtual slidebox |
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http://www.path.uiowa.edu/virtualslidebox |
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| Pathology |
Pathopic |
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http://alf3.urz.unibas.ch/pathopic/e/intro.html |
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| Pathweb |
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http://pathwe.uchc.edu/ |
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| Bioscience Tumor
atlas |
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http://www.bioscience.org/atlases/tumpath/tumpath.htm |
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| Brown Medical School Digital pathology |
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http://www.brown.edu/course/digital_path/nonflash.htm |
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| University of Washington |
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http://www.pathology.washington.edu/about/education/gallery |
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| Links |
Martindale's virtual medical center |
Numerous links |
http://www.martindalecenter.com/Reference_3_LabP.html |
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| University of Arizona |
Links |
http://swehsc.pharmacy.arizona.edu/exppath/micro/histology.html |
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| Pathmax |
Links |
http://www.pathmax.com/main.html |
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Embryology |
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EMAP Edinburgh Mouse Atlas Project |
Wonderful 2D, 3D |
http://genex.hgu.mrc.ac.uk/ |
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Bioscience Atlas of human embryogenesis |
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http://bioscience.org/flash/embryo/embryo.htm |
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Multidimensional human embryo |
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http://embryo.soad.mich.edu/ |
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The Visible Embryo |
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http://www.visembryo.com/baby/index.html |
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Human Embryology |
Book chapters with animations |
http://cna.uc.edu/embryology/ |
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Links |
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Netvet |
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http://netvet.wustl.edu/rodents.htm |
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RENI links |
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http://www.item.fraunhofer.de/reni/index.htm |
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Mail lists, forums |
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Whole Mouse Catalog |
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http://www.muridae.com/wmc/ |
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Transgenic list |
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http://mailman.ic.ac.uk/mailman/listinfo/transgenic-list |
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Histonet |
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http://www.histosearch.com/histonet.html |
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PHENOME-LISTservice
discussion of strain characterization, phenotypic data &related topics. |
http://aretha.jax.org/pub-cgi/phenome/mpdcgi?rtn=docs/phenomelist |
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Bionet lists |
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http://www.bio.net/archives.html |
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