!autogenerated-by: Pathbase version 2.2 !saved-by: mgruenb !date: Wed Sep 10 09:27:39 BST 2008 !version: $Revision: 2.0 $ !The Pathbase mouse pathology ontology provides a description of mutant and transgenic mouse pathology phenotypes and incorporates 425 known mouse pathologies hierarchically organised as "instances of" pathological processes. !Questions, comments and suggestions for amendment should be sent to the Co-ordinator, Dr. Paul Schofield, Dept. of Anatomy, University of Cambridge (PS@mole.bio.cam.ac.uk). !The ontology was developed by the Pathbase consortium (http://www.pathbase.net) funded under the European Commission's Fifth Framework programme, Contract number QLRI-CT-1999-00320. $pathology_ontology ; MPATH:0 %cell and tissue damage ; MPATH:1 %cell death ; MPATH:2 %apoptosis ; MPATH:3 ; synonym:programmed cell death %necrosis ; MPATH:4 %bridging necrosis ; MPATH:5 %caseous necrosis ; MPATH:6 %coagulation necrosis ; MPATH:7 %fat necrosis ; MPATH:8 %fibrinoid necrosis ; MPATH:9 %gangrene ; MPATH:10 ; synonym:mortification %hemorrhagic necrosis ; MPATH:11 %liquefactive necrosis ; MPATH:12 %piecemeal necrosis ; MPATH:13 %degenerative change ; MPATH:14 %general degenerative change ; MPATH:15 %myxoid/myxomatous degeneration ; MPATH:16 ; synonym:mucoid degeneration ; synonym:myxomatosis %ulcer ; MPATH:579 %erosion ; MPATH:580 %subcellular defect ; MPATH:17 %cytoskeletal defect ; MPATH:18 %endoplasmic reticulum defect ; MPATH:19 %golgi defect ; MPATH:20 %lysosomal defect ; MPATH:21 %mitochondrial defect ; MPATH:22 %peroxysomal defect ; MPATH:23 %plasma membrane defect ; MPATH:24 %nuclear defect ; MPATH:460 %tissue specific degenerative process ; MPATH:25 %alopecia ; MPATH:26 %cicatricial alopecia ; MPATH:582 %scarring alopecia ; MPATH:583 %arthrosis ; MPATH:27 ; synonym:degenerative joint disease ; synonym:osteoarthrosis %atherosclerosis ; MPATH:28 %cataract ; MPATH:29 %cataract- capsular-epithelial ; MPATH:461 %cataract- nuclear and cortical ; MPATH:462 %cataract- cortical liquefactive ; MPATH:463 %cataract- lens extrusion ; MPATH:464 %cystic medial necrosis ; MPATH:30 ; synonym:erdheim disease ; synonym:mucoid medial degeneration ; synonym:media necrosis aortae idiopathica cystica ; synonym:media necrosis of the aorta %emphysema ; MPATH:31 %glaucoma ; MPATH:32 %glaucoma developmental ; MPATH:465 %glaucoma- open angle ; MPATH:466 %glaucoma- angle closure ; MPATH:467 %myelofibrosis ; MPATH:584 %polycystic disease ; MPATH:586 ; synonym:polycystic kidney disease ; synonym:polycystic liver disease ; synonym:polycystic ovary %dystrophy ; MPATH:554 %intracellular and extracellular accumulation ; MPATH:33 %amyloid deposition ; MPATH:34 ; synonym:amyloidosis %bile deposition ; MPATH:35 %ceroid deposition ; MPATH:37 %glycogen deposition ; MPATH:39 %hyalinosis ; MPATH:40 ; synonym:hyaline degeneration, eosinophilic cytoplasmic change %lipid deposition ; MPATH:42 %lipofuscin deposition ; MPATH:43 %melanin deposition ; MPATH:44 %protein deposition ; MPATH:45 %copper deposition ; MPATH:38 % mineralisation ; MPATH:555 %iron deposition ; MPATH:41 % mineralisation ; MPATH:555 %uric acid deposition ; MPATH:46 %pseudocyst ; MPATH:468 %mucous secretions ; MPATH:547 %mineralisation ; MPATH:555 %calcium deposition ; MPATH:36 %copper deposition ; MPATH:38 % protein deposition ; MPATH:45 %iron deposition ; MPATH:41 % protein deposition ; MPATH:45 %acidophilic macrophage pneumonia ; MPATH:585 %intracellular and extracellular depletion ; MPATH:47 %decalcification ; MPATH:48 %demyelination ; MPATH:49 %glycogen depletion ; MPATH:50 %hypocalcification ; MPATH:51 %lipid depletion ; MPATH:52 %osteopenia ; MPATH:53 %osteoporosis ; MPATH:54 %developmental and structural abnormality ; MPATH:55 %general developmental defect ; MPATH:56 %agenesis ; MPATH:57 ; synonym:agenesia %aplasia ; MPATH:58 %branching morphogenesis defect ; MPATH:59 %communication defect ; MPATH:60 %curvature defect ; MPATH:61 %cyst ; MPATH:62 %depletion ; MPATH:63 %developmental dysplasia ; MPATH:64 %developmental cystic dysplasia ; MPATH:473 %dilatation ; MPATH:66 %ectasia ; MPATH:474 %lymphangiectasis ; MPATH:98 % cardiovascular developmental defect ; MPATH:89 %ductal ectasia ; MPATH:475 %telangiectasia ; MPATH:476 %displacement and deformity ; MPATH:67 %diverticulum ; MPATH:68 %fistula ; MPATH:70 %fusion defect ; MPATH:71 %growth acceleration ; MPATH:72 %growth arrest ; MPATH:73 %hamartoma ; MPATH:74 %odontoma ; MPATH:387 % complex or mixed tumor ; MPATH:254 % odontogenic tumor ; MPATH:379 %lymphangioma ; MPATH:420 ; synonym:cystic hygroma % lymphatic vessel tumor ; MPATH:419 %hernia ; MPATH:75 %heterotopia ; MPATH:76 ; synonym:ectopia %malposition ; MPATH:79 ; synonym:misplacement %homoeotic change ; MPATH:77 %incomplete closure ; MPATH:78 %obstruction and stenosis ; MPATH:80 %perforation ; MPATH:81 %persistent embryonic structure ; MPATH:82 ; synonym:embryonic rest. %septation defect ; MPATH:83 %supernumerary structure ; MPATH:84 %transdifferentiation ; MPATH:85 %metaplasia ; MPATH:160 % growth and differentiation defect ; MPATH:126 %cartilaginous metaplasia ; MPATH:161 %epithelial metaplasia ; MPATH:162 %apocrine metaplasia ; MPATH:163 %gastric metaplasia ; MPATH:164 %glandular metaplasia ; MPATH:165 %goblet cell metaplasia ; MPATH:166 %intestinal metaplasia ; MPATH:167 %nephrogenic metaplasia ; MPATH:169 ; synonym:nephrogenic adenoma %oncocytic metaplasia ; MPATH:170 %squamous metaplasia ; MPATH:171 %transitional cell metaplasia ; MPATH:172 %lipomatous metaplasia ; MPATH:168 %osseous metaplasia ; MPATH:174 %symmetry defect ; MPATH:469 %left/right axis defect ; MPATH:470 %anterior/posterior axis defect ; MPATH:471 %dorsal/ventral axis defect ; MPATH:472 %choristoma ; MPATH:477 ; synonym:choristoblastoma %organ specific developmental defect ; MPATH:86 %germ cell defect ; MPATH:87 %cardiovascular developmental defect ; MPATH:89 %aneurysm ; MPATH:90 %arteriovenous anastomosis ; MPATH:91 ; synonym:anastomosis arteriolovenularis ; synonym:anastomosis arteriovenosa ; synonym:arteriolovenular anastomosis %cardiac defect ; MPATH:92 ; synonym:heart abnormalities %cardiac septation defect ; MPATH:93 %valve defect ; MPATH:94 %ventricular hypertrophy ; MPATH:95 %ventricular hypoplasia ; MPATH:96 %dissecting aneurysm ; MPATH:97 %lymphangiectasis ; MPATH:98 % ectasia ; MPATH:474 %varices ; MPATH:99 %angiogenesis defect ; MPATH:478 %vasculogenesis defect ; MPATH:479 %placental abnormality ; MPATH:100 %glycogen cell defect ; MPATH:101 %labyrinth zone defect ; MPATH:102 %placental vascular defect ; MPATH:103 %spongiotrophoblast defect ; MPATH:104 %decidual defect ; MPATH:480 %circulation disorder ; MPATH:105 %fluid accumulation ; MPATH:106 %congestion ; MPATH:107 %edema ; MPATH:109 %disseminated intravascular coagulation ; MPATH:108 ; synonym:dic %embolus ; MPATH:110 %air embolism ; MPATH:111 %amniotic fluid embolism ; MPATH:112 %atrial embolism ; MPATH:113 %bone marrow embolism ; MPATH:114 %fat embolism ; MPATH:115 %pulmonary embolism ; MPATH:116 %skin embolism ; MPATH:117 %systemic embolism ; MPATH:118 %hemorrhage and non-specified extravasation ; MPATH:119 %ecchymosis ; MPATH:120 %hematoma ; MPATH:121 ; synonym:bruise %petechia ; MPATH:122 %purpura ; MPATH:123 %infarction ; MPATH:124 %thrombosis ; MPATH:125 %growth and differentiation defect ; MPATH:126 %atrophy ; MPATH:127 %hypoplasia ; MPATH:133 ; synonym:developmental hypoplasia %hyperplasia ; MPATH:134 %epithelial and stromal hyperplasia ; MPATH:135 %fibroepithelial polyp ; MPATH:136 ; synonym:skin tag % epithelial hyperplasia ; MPATH:138 %fibroglandular hyperplasia ; MPATH:137 %cystic hyperplasia ; MPATH:594 %epithelial hyperplasia ; MPATH:138 %fibroepithelial polyp ; MPATH:136 ; synonym:skin tag % epithelial and stromal hyperplasia ; MPATH:135 %goblet cell hyperplasia ; MPATH:139 %intraductal hyperplasia ; MPATH:142 %microglandular hyperplasia ; MPATH:143 ; synonym:microglandular adenosis %myoepithelial hyperplasia ; MPATH:144 %polyp ; MPATH:491 %hyperplastic polyp ; MPATH:140 %inflammatory polyp ; MPATH:141 ; synonym:pseudopolyp %fat cell hyperplasia ; MPATH:145 %histiocytosis ; MPATH:146 %lymphoid hyperplasia ; MPATH:147 ; synonym:lymphoid hypertrophy %mesothelial hyperplasia ; MPATH:148 ; synonym:mesothelioma %squamous hyperplasia ; MPATH:149 ; synonym:epidermal hyperplasia. ; synonym:squamous cell hyperplasia %acanthosis ; MPATH:150 %actinic keratosis ; MPATH:151 % intra-epithelial neoplasia ; MPATH:128 %basal cell hyperplasia ; MPATH:152 %hypergranulosis ; MPATH:153 %hyperkeratosis ; MPATH:154 ; synonym:cornification ; synonym:hyperparakeratosis ; synonym:hyperorthokeratosis %orthokeratosis ; MPATH:155 %parakeratosis ; MPATH:156 %pseudoepithelioma/pseudocarcinoma ; MPATH:157 ; synonym:pseudocarcinoma ; synonym:pseudocarcinomatous hyperplasia ; synonym:pseudoepitheliomatous hyperplasia %seborrheic keratosis ; MPATH:158 ; synonym:basal cell papilloma ; synonym:seborrheic verruca %focal hyperplasia ; MPATH:482 %nodular hyperplasia ; MPATH:484 ; synonym:hyperplastic nodules %cribriform epididymal hyperplasia ; MPATH:587 %hypertrophy ; MPATH:159 %metaplasia ; MPATH:160 % transdifferentiation ; MPATH:85 %cartilaginous metaplasia ; MPATH:161 %epithelial metaplasia ; MPATH:162 %apocrine metaplasia ; MPATH:163 %gastric metaplasia ; MPATH:164 %glandular metaplasia ; MPATH:165 %goblet cell metaplasia ; MPATH:166 %intestinal metaplasia ; MPATH:167 %nephrogenic metaplasia ; MPATH:169 ; synonym:nephrogenic adenoma %oncocytic metaplasia ; MPATH:170 %squamous metaplasia ; MPATH:171 %transitional cell metaplasia ; MPATH:172 %lipomatous metaplasia ; MPATH:168 %osseous metaplasia ; MPATH:174 %desmoplasia ; MPATH:581 ; synonym:scirrhous ; synonym:sclerosis %dysplasia ; MPATH:589 %fibro-osseous lesion ; MPATH:590 ; synonym:fibrous dysplasia ; synonym:osteodysplasia ; synonym:fibrous osteodystrophy ; synonym:osteofibrosis ; synonym:osteodystrophy %osteopetrosis ; MPATH:592 ; synonym:marble bones ; synonym:albers-schoenberg disease ; synonym:marble bone disease %healing and repair ; MPATH:175 %connective tissue replacement ; MPATH:176 %angiogenesis ; MPATH:177 %extracellular matrix deposition ; MPATH:178 %fibrin deposition ; MPATH:179 %fibroblast proliferation ; MPATH:180 %fibrosis ; MPATH:181 %gliosis ; MPATH:182 %granulation tissue ; MPATH:183 %sclerosis ; MPATH:184 ; synonym:induration %fatty infiltration ; MPATH:591 %parenchymal regeneration ; MPATH:185 %complete parenchymal regeneration ; MPATH:186 %incomplete parenchymal regeneration ; MPATH:187 %immunopathology ; MPATH:188 %hypersensitivity disease ; MPATH:189 %type i hypersensitivity ; MPATH:190 %type ii hypersensitivity ; MPATH:191 %type iii hypersensitivity ; MPATH:192 %type iv hypersensitivity ; MPATH:193 %immune mediated disease ; MPATH:194 %arthritis ; MPATH:195 %dermatitis ; MPATH:196 %glomerulonephritis ; MPATH:197 %membraneous glomerulonephritis ; MPATH:492 %membraneoproliferative glomerulonephritis ; MPATH:493 %autoimmune glomerulonephritis ; MPATH:494 %immune mediated hemolytic anaemia ; MPATH:198 %immune mediated thrombocytopenia ; MPATH:199 %myositis ; MPATH:200 ; synonym:initis %vasculitis ; MPATH:201 ; synonym:angiitis ; synonym:arteritis ; synonym:phlebitis ; synonym:lymphangiitis %neuritis ; MPATH:553 %immunodeficiency disease ; MPATH:202 %primary immunodeficiency disease ; MPATH:206 %immunodeficiency - lymphoid defect ; MPATH:207 %immunodeficiency - myeloid/phagocytic defect ; MPATH:208 %secondary immunodeficiency disease ; MPATH:209 %acquired immunodeficiency ; MPATH:210 %failed transfer of maternal immunoglobulin ; MPATH:211 %inflammation ; MPATH:212 %acute inflammation ; MPATH:213 %chronic inflammation ; MPATH:214 %granulomatous inflammation ; MPATH:215 %necrotic inflammation ; MPATH:216 %neoplasia ; MPATH:218 %adnexal and skin appendage tumor ; MPATH:219 %apocrine adenocarcinoma ; MPATH:220 % adenocarcinoma ; MPATH:268 %apocrine adenoma ; MPATH:221 % adenoma ; MPATH:270 %ceruminous adenocarcinoma ; MPATH:222 % adenocarcinoma ; MPATH:268 %ceruminous adenoma ; MPATH:223 % adenoma ; MPATH:270 %clear cell hidradenoma ; MPATH:224 ; synonym:eccrine acrospiroma ; synonym:nodular hidradenoma % adenoma ; MPATH:270 %eccrine gland adenocarcinoma ; MPATH:225 % adenocarcinoma ; MPATH:268 %eccrine gland adenoma ; MPATH:226 % adenoma ; MPATH:270 %eccrine papillary adenoma ; MPATH:227 ; synonym:papillary adenoma ; synonym:benign neoplasm of the eccrine gland, papillary form % adenoma ; MPATH:270 %papillary hidradenoma ; MPATH:228 ; synonym:hidradenoma papilliferum % adenoma ; MPATH:270 %sebaceous adenocarcinoma ; MPATH:229 ; synonym:sebaceous carcinoma % adenocarcinoma ; MPATH:268 %sebaceous adenoma ; MPATH:230 ; synonym:epithelioma % adenoma ; MPATH:270 %syringoma ; MPATH:231 %basal cell tumor ; MPATH:233 ; synonym:benign basal cell tumor ; synonym:basal cell adenoma % adenoma ; MPATH:270 %myoepithelioma ; MPATH:294 ; synonym:myoepithelial adenoma % adenoma ; MPATH:270 %melanocytic tumor ; MPATH:358 % neoplasia ; MPATH:218 %melanoma ; MPATH:359 ; synonym:melanosarcoma ; synonym:melanosarcoma, malignant melanoma %melanoma in situ ; MPATH:360 ; synonym:level i melanoma % potentially cancerous lesions ; MPATH:556 %naevus ; MPATH:361 ; synonym:mole (sensu melanocytic nevus) %inverted squamous papilloma ; MPATH:443 ; synonym:endophytic papilloma ; synonym:invaginated papilloma % squamous cell tumor ; MPATH:442 % papilloma ; MPATH:445 %keratoacanthoma ; MPATH:444 ; synonym:epithelioma, intracutaneous, cornifying % squamous cell tumor ; MPATH:442 %squamous cell carcinoma ; MPATH:446 ; synonym:carcinoma, epidermoid ( sensu epidermal derived tumors) % squamous cell tumor ; MPATH:442 % carcinoma ; MPATH:549 %squamous cell carcinoma in situ ; MPATH:447 ; synonym:severe intra-epithelial neoplasia ; synonym:ieniii % intra-epithelial neoplasia ; MPATH:128 % squamous cell tumor ; MPATH:442 %squamous cell papilloma ; MPATH:448 ; synonym:exophytic papilloma % squamous cell tumor ; MPATH:442 % papilloma ; MPATH:445 %pilomatricoma ; MPATH:571 % basaloid follicular neoplasms ; MPATH:575 %basaloid follicular neoplasms ; MPATH:575 %trichoepithelioma ; MPATH:232 ; synonym:epithelioma adenoides cysticum ; synonym:benign ; synonym:hair follicle tumor %basal cell carcinoma ; MPATH:234 % carcinoma ; MPATH:549 %pilomatricoma ; MPATH:571 % adnexal and skin appendage tumor ; MPATH:219 %spiradenoma ; MPATH:577 %trichoblastoma ; MPATH:578